y PlantCAZyme

CAZyme Information

Basic Information
SpeciesBrachypodium distachyon
Cazyme IDBradi1g53430.2
FamilyGH28
Protein PropertiesLength: 480 Molecular Weight: 51810.4 Isoelectric Point: 6.3431
ChromosomeChromosome/Scaffold: 1 Start: 51777762 End: 51781109
DescriptionPectin lyase-like superfamily protein
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH28744110
  ANKGGAQLFVPAGRWLTGSFSLVSHLTVSLDKDAVILGSPDSSDWPVIDPLPSYGRGRELPGKRHQSLIFGSNLTDVIITGANGTIDGQGEIWWNWFHNH
  TLNYTRPPLVEFMYSTRVVVSNLTFTNSPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSTNVCIEDCYIRNGDDIVVIKSGWDEYGISFAYPSS
  NISIQNITGQTRSSAGIALGSEMSGGISNVRAVGIRIVNSVHGIRIKTAPGRGGYVKNVYIADVSMDNVSIAIRITANYGEHPDDKYDKNALPIISNITI
  KNVIGANIGVAGMLQGIQGDSFSNICLSNVTLSTKSMD
Full Sequence
Protein Sequence     Length: 480     Download
MSRSASIFQA LLVFTTVAAE IQWSSVSGMY CKDLTASVYR PHSVSITEFG AVGDGMTRNT    60
KAFQNAIFYL SSFANKGGAQ LFVPAGRWLT GSFSLVSHLT VSLDKDAVIL GSPDSSDWPV    120
IDPLPSYGRG RELPGKRHQS LIFGSNLTDV IITGANGTID GQGEIWWNWF HNHTLNYTRP    180
PLVEFMYSTR VVVSNLTFTN SPFWNIHPVY CSQVLVQHLT ILAPISSPNT DGIDPDSSTN    240
VCIEDCYIRN GDDIVVIKSG WDEYGISFAY PSSNISIQNI TGQTRSSAGI ALGSEMSGGI    300
SNVRAVGIRI VNSVHGIRIK TAPGRGGYVK NVYIADVSMD NVSIAIRITA NYGEHPDDKY    360
DKNALPIISN ITIKNVIGAN IGVAGMLQGI QGDSFSNICL SNVTLSTKSM DPWNCSLVEG    420
YSNSVSPEIC EELRTNPGPD QVCYDGNYLA SAEVPSQAPQ KSSASRLLNP FHKLASVRA*    480
                                                                     540
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
PLN02218PLN022182.0e-2636381366+
PLN02793PLN027931.0e-2640352327+
pfam00295Glyco_hydro_289.0e-31142416282+
PLN03003PLN030036.0e-3242380352+
COG5434PGU14.0e-5244356336+
Gene Ontology
GO TermDescription
GO:0004650polygalacturonase activity
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACR35653.1014718481unknown [Zea mays]
GenBankEEC81792.10147730504hypothetical protein OsI_25505 [Oryza sativa Indica Group]
GenBankEEE66877.10147730504hypothetical protein OsJ_23693 [Oryza sativa Japonica Group]
RefSeqNP_001151479.1014711469polygalacturonase [Zea mays]
RefSeqXP_002459610.102047536494hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3jur_D04240626411A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima
PDB3jur_C04240626411A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima
PDB3jur_B04240626411A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima
PDB3jur_A04240626411A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima
PDB1bhe_A4e-188840952365A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Metabolic Pathways
Pathway NameReactionECProtein Name
homogalacturonan degradationRXN-2103EC-3.2.1.15polygalacturonase
Signal Peptide
Cleavage Site
19
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO86961433473400
GO865721300633620
GO86957131273170
GO7997063011694680
EB6684082771103860
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_003_00296.1Aquca_003_00639.3Aquca_003_00639.2Aquca_003_00639.1Aquca_003_00639.4
Aquca_014_00381.1Aquca_038_00086.1Aquca_037_00120.3Aquca_037_00120.2Aquca_037_00120.1
Aquca_038_00085.1Aquca_076_00048.1Aquca_020_00507.1
Arabidopsis lyrata486722906271492486866235486630
494984492520328395318449900877
477994493797472140905397906150
Arabidopsis thalianaAT3G62110.1AT4G23820.1AT3G48950.1AT3G61490.3AT3G61490.2
AT3G61490.1AT5G41870.1AT4G33440.1AT4G23500.1AT3G16850.1
AT5G49215.2AT5G49215.1AT2G23900.1AT3G06770.3AT3G06770.1
AT3G06770.2AT1G19170.1AT3G42950.1
Brachypodium distachyonBradi1g53430.1Bradi4g05050.1Bradi1g02720.2Bradi1g02720.1Bradi2g43750.1
Bradi1g52050.1Bradi4g11087.1Bradi1g76890.1Bradi3g13260.1Bradi4g31250.1
Bradi1g53430.3Bradi3g56787.1Bradi3g09590.1
Brassica rapaBra003485Bra007662Bra019264Bra013734Bra018023
Bra020656Bra007609Bra011440Bra019299Bra028511
Bra037005Bra013697Bra022182Bra037429Bra032138
Bra001642Bra001215Bra018004Bra016521Bra039462
Bra007626
Carica papayaevm.model.supercontig_107.107evm.model.supercontig_9.114evm.model.supercontig_29.51evm.model.supercontig_180.28evm.model.supercontig_57.18
evm.TU.contig_27928.2evm.model.supercontig_486.2evm.model.supercontig_151.35evm.model.supercontig_107.108evm.model.supercontig_28.9
Capsella rubellaCarubv10017170mCarubv10018803mCarubv10004811mCarubv10017147mCarubv10013686m
Carubv10026227mCarubv10004724mCarubv10004660mCarubv10024654mCarubv10004799m
Carubv10013668mCarubv10013478mCarubv10011469mCarubv10017105m
Citrus clementinaCiclev10020035mCiclev10004943mCiclev10004942mCiclev10019941mCiclev10019597m
Ciclev10004864mCiclev10003286mCiclev10020162mCiclev10008093m
Citrus sinensisorange1.1g012308morange1.1g012788morange1.1g011659morange1.1g009075morange1.1g011615m
orange1.1g013402morange1.1g020062morange1.1g020257morange1.1g023585morange1.1g021449m
orange1.1g038330morange1.1g036161morange1.1g038535morange1.1g036907m
Cucumis sativusCucsa.258550.1Cucsa.252790.1Cucsa.228510.1Cucsa.303830.1Cucsa.192980.1
Cucsa.141920.1
Eucalyptus grandisEucgr.K00562.2Eucgr.K00562.1Eucgr.D01821.1Eucgr.E00104.1Eucgr.E00105.1
Eucgr.D01730.1Eucgr.I00199.1Eucgr.A01315.1Eucgr.A02742.1Eucgr.E00853.1
Eucgr.A02740.1Eucgr.C00786.1
Fragaria vescamrna24477.1-v1.0-hybridmrna20022.1-v1.0-hybridmrna31826.1-v1.0-hybridmrna16186.1-v1.0-hybridmrna19241.1-v1.0-hybrid
mrna11093.1-v1.0-hybridmrna07072.1-v1.0-hybridmrna06153.1-v1.0-hybridmrna32082.1-v1.0-hybridmrna23300.1-v1.0-hybrid
mrna12538.1-v1.0-hybrid
Glycine maxGlyma19g40940.1Glyma10g27840.3Glyma10g27840.2Glyma03g38350.3Glyma03g38350.2
Glyma03g38350.1Glyma07g07280.1Glyma07g07290.2Glyma07g07290.1Glyma05g37490.1
Glyma02g01050.1Glyma08g02050.2Glyma08g02050.1Glyma07g37320.1Glyma07g37320.2
Glyma09g39200.1Glyma18g47130.1Glyma16g03680.2Glyma16g03680.1Glyma17g03300.1
Glyma15g15690.1Glyma09g04560.1Glyma08g41530.1Glyma18g14640.1Glyma10g37540.1
Glyma10g37530.1Glyma10g37540.2Glyma10g37540.3Glyma02g01910.1Glyma10g02030.1
Glyma14g03710.1Glyma03g37480.2Glyma03g37480.1Glyma19g40100.2Glyma06g15940.1
Glyma16g29780.1Glyma09g24470.1Glyma17g05550.1Glyma13g17170.1Glyma09g08270.1
Glyma15g19820.1Glyma14g03710.2Glyma10g02030.2Glyma02g45080.1Glyma20g30240.2
Glyma19g40100.3.92.249Glyma19g40100.3.92.249Glyma19g40100.3.251.383Glyma19g40100.3.251.383
Gossypium raimondiiGorai.008G134500.2Gorai.008G134500.1Gorai.004G147300.5Gorai.004G147300.4Gorai.004G147300.3
Gorai.004G147300.2Gorai.004G147300.1Gorai.006G077400.1Gorai.007G102200.2Gorai.007G102200.1
Gorai.001G158900.1Gorai.006G260100.3Gorai.006G260100.2Gorai.006G260100.1Gorai.011G194200.1
Gorai.012G035300.1Gorai.003G066600.1Gorai.003G155800.2Gorai.003G155800.1Gorai.008G274700.1
Gorai.004G138900.1Gorai.007G012900.1Gorai.007G026000.2Gorai.007G026000.1Gorai.004G134000.1
Gorai.012G035300.2Gorai.001G016500.1Gorai.009G036700.1Gorai.010G090400.1Gorai.007G026000.4
Gorai.004G134000.2Gorai.007G102200.4Gorai.007G102200.3Gorai.006G077400.2Gorai.006G077400.3
Gorai.009G036700.2Gorai.007G026000.3Gorai.004G134000.3Gorai.010G090400.2
Linum usitatissimumLus10038030Lus10007922Lus10032374Lus10028766Lus10017517
Lus10003589Lus10003890Lus10037714Lus10016837Lus10014799
Lus10023101Lus10039279Lus10027516Lus10027646Lus10039909
Lus10009972Lus10001899
Malus domesticaMDP0000130769MDP0000175027MDP0000137792MDP0000581832MDP0000610678
MDP0000202282MDP0000174216MDP0000147794MDP0000251956MDP0000254231
MDP0000225538MDP0000249285MDP0000249275MDP0000236768MDP0000321745
MDP0000766241MDP0000515489MDP0000128139MDP0000818931MDP0000665344
MDP0000269019MDP0000191981MDP0000292963MDP0000199345
Manihot esculentacassava4.1_026138mcassava4.1_007057mcassava4.1_007003mcassava4.1_023296mcassava4.1_007008m
cassava4.1_006215mcassava4.1_007421mcassava4.1_032219mcassava4.1_007592mcassava4.1_007544m
cassava4.1_033273mcassava4.1_026691mcassava4.1_026082mcassava4.1_008164mcassava4.1_006317m
cassava4.1_006279m
Medicago truncatulaMedtr7g110710.1Medtr4g120730.1Medtr7g088550.1Medtr7g038050.1Medtr7g078680.1
Medtr1g100050.1Medtr1g100060.1Medtr1g099850.1Medtr1g100040.1Medtr5g090160.1
Medtr3g096330.1Medtr1g086030.1Medtr2g042740.1Medtr4g124980.1Medtr2g083670.1
Mimulus guttatusmgv1a006147mmgv1a005694mmgv1a024920mmgv1a005601mmgv1a006062m
mgv1a023393mmgv1a006305mmgv1a005053mmgv1a004737mmgv1a005168m
Oryza sativaLOC_Os07g14160.1LOC_Os07g14160.4LOC_Os07g14160.3LOC_Os07g14160.2LOC_Os11g43750.1
LOC_Os03g61800.3LOC_Os03g61800.2LOC_Os03g61800.1LOC_Os05g50960.1LOC_Os12g36810.1
LOC_Os08g01600.1LOC_Os02g15690.1LOC_Os03g03350.1LOC_Os01g43160.1LOC_Os09g26800.1
LOC_Os02g54030.1
Panicum virgatumPavirv00030219mPavirv00058435mPavirv00018035mPavirv00034723mPavirv00048083m
Pavirv00017919mPavirv00069831mPavirv00004220mPavirv00021016mPavirv00014813m
Pavirv00063415mPavirv00050881mPavirv00038988mPavirv00052892mPavirv00056428m
Pavirv00042769mPavirv00017327mPavirv00038561mPavirv00048354mPavirv00014455m
Pavirv00035750mPavirv00054923m
Physcomitrella patensPp1s294_11V6.1Pp1s18_221V6.1Pp1s194_34V6.1Pp1s252_60V6.1Pp1s20_252V6.2
Pp1s60_185V6.1Pp1s20_252V6.1
Phaseolus vulgarisPhvul.001G218400.1Phvul.007G209200.1Phvul.002G292300.1Phvul.008G059700.1Phvul.007G165300.1
Phvul.009G252200.1Phvul.006G028800.1Phvul.008G199400.1Phvul.003G108700.1Phvul.004G047800.1
Phvul.007G217500.1Phvul.004G047700.1Phvul.004G108800.1Phvul.001G210300.2Phvul.001G210300.1
Phvul.009G151200.1Phvul.007G074300.1Phvul.003G129300.1Phvul.009G225400.1
Picea abiesMA_88519g0010MA_104339g0010MA_10430135g0020MA_10435166g0010MA_98717g0010
MA_6380g0020MA_11025g0010MA_345765g0010MA_9467735g0010MA_5735762g0010
MA_10436451g0020
Populus trichocarpaPotri.002G186900.2Potri.002G186900.1Potri.014G112100.1Potri.001G100000.1Potri.003G131700.1
Potri.010G005500.1Potri.010G008600.1Potri.008G211500.1Potri.002G162400.1Potri.007G105800.1
Potri.005G063400.1Potri.017G145900.1Potri.003G139100.1Potri.004G073900.1Potri.018G062700.2
Potri.006G139500.1Potri.018G062700.1Potri.006G139500.2Potri.002G162400.5Potri.002G162400.3
Potri.002G162400.2Potri.002G162400.4
Prunus persicappa005310mppa005599mppa005818mppa004996mppa005015m
ppa018224mppa006130mppa005185mppa020086mppa018901m
ppa004793m
Ricinus communis56826.m00002730190.m01126429726.m00410530169.m00662330174.m008646
30137.m00044030190.m01082329739.m00372830169.m006622.88.25030169.m006622.88.250
30169.m006622.270.40630169.m006622.270.40633029.m00002237576.m00002039176.m000013
Setaria italicaSi032032mSi035484mSi026354mSi006319mSi006318m
Si001461mSi035616mSi013629mSi022052mSi017201m
Si029141mSi016984m
Selaginella moellendorffii12401133152785567493499190
Sorghum bicolorSb02g007470.1Sb01g002550.1Sb10g000660.1Sb07g000740.1Sb03g028140.1
Sb04g009310.1Sb01g048880.1Sb09g030140.1Sb05g025980.1Sb02g025730.1
Sb04g035020.1
Thellungiella halophilaThhalv10005947mThhalv10005946mThhalv10005945mThhalv10005958mThhalv10025189m
Thhalv10005939mThhalv10025100mThhalv10025011mThhalv10004215mThhalv10020710m
Thhalv10020733mThhalv10000145mThhalv10027766mThhalv10027765mThhalv10010343m
Thhalv10007407mThhalv10002498mThhalv10011050m.73.238Thhalv10011050m.73.238Thhalv10011050m.276.426
Thhalv10011050m.276.426
Vitis viniferaGSVIVT01028246001GSVIVT01035089001GSVIVT01028057001GSVIVT01019516001GSVIVT01026477001
GSVIVT01015044001GSVIVT01019405001GSVIVT01028861001GSVIVT01026985001GSVIVT01028860001.80.271
GSVIVT01028860001.80.271GSVIVT01028860001.331.546GSVIVT01028860001.331.546
Zea maysAC231180.2_FGT006
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)