y PlantCAZyme

CAZyme Information

Basic Information
SpeciesBrachypodium distachyon
Cazyme IDBradi2g55417.1
FamilyGT30
Protein PropertiesLength: 451 Molecular Weight: 49858.5 Isoelectric Point: 9.099
ChromosomeChromosome/Scaffold: 2 Start: 54059371 End: 54063727
DescriptionKDO transferase A
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT30462270
  RWPERLGQPSVARPLPGSPLVWFHAVSLGEGMAALPVVRHCARLHPGLPILLTTTTLSSFEVIKDLLPDVVIYQFAPLDCPDAIENFIGYWKPSLILLME
  SELWPNLIISAAEKGIVVALLNARMSLKSFDRWSVPLGLPLVSLMLSKISLVIPLSTIQAVRFQLLHTPPQKIHFAGDLKYA
Full Sequence
Protein Sequence     Length: 451     Download
MRPAHTPASA ARGGRALYEL YRAASRVAAP AVLLWRRLRG LEHPSRWPER LGQPSVARPL    60
PGSPLVWFHA VSLGEGMAAL PVVRHCARLH PGLPILLTTT TLSSFEVIKD LLPDVVIYQF    120
APLDCPDAIE NFIGYWKPSL ILLMESELWP NLIISAAEKG IVVALLNARM SLKSFDRWSV    180
PLGLPLVSLM LSKISLVIPL STIQAVRFQL LHTPPQKIHF AGDLKYAVGD VEVGEKELNT    240
INDLQQQFGN RPIWMAASIH KGEEEVILHV HDELIKLHPS LLLILVPRHP HDSKILSLAL    300
KKRKFNFVLR STMEVVSLNT RIYLVDTLGE LRMLYRVTPI AVVGGSFLPS LAGHNFSEAA    360
AAGCAVLTGS HVGHFYHMLV EMWQINPLAV KQLTGEVELL EALKELLGDS KALEARQRAA    420
KDAFSVMSDG IVNRIWNLVC IFAIDSNRST *                                   480
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam04413Glycos_transf_N1.0e-5543228186+
COG1519KdtA2.0e-9020439427+
PRK05749PRK057493.0e-9720375360+
Gene Ontology
GO TermDescription
GO:0005529Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah]
GO:0005975carbohydrate metabolic process
GO:0016740transferase activity
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACN31913.1014501447unknown [Zea mays]
GenBankEEC71834.1014501450hypothetical protein OsI_04493 [Oryza sativa Indica Group]
RefSeqXP_002322900.10114395433predicted protein [Populus trichocarpa]
RefSeqXP_002458792.1014501450hypothetical protein SORBIDRAFT_03g040370 [Sorghum bicolor]
RefSeqXP_002528642.10844634423-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2xcu_D9e-276641943356A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate
PDB2xcu_C9e-276641943356A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate
PDB2xcu_B9e-276641943356A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate
PDB2xcu_A9e-276641943356A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate
PDB2xci_D9e-276641943356A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form
Metabolic Pathways
Pathway NameReactionECProtein Name
KDO transfer to lipid IVA IKDOTRANS-RXNEC-2.4.99.12lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
KDO transfer to lipid IVA IKDOTRANS2-RXNEC-2.4.99.13(KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
CB67594827042730
DR80798325312530
DV17498924712470
BG606725194322250
DY279419340353740
Orthologous Group
SpeciesID
Arabidopsis lyrata325028
Arabidopsis thalianaAT5G03770.1
Brassica rapaBra009511
Carica papayaevm.model.supercontig_5.99
Capsella rubellaCarubv10000940m
Chlamydomonas reinhardtiiCre13.g583100.t1.3
Citrus clementinaCiclev10032390mCiclev10032645m
Cucumis sativusCucsa.039090.1
Eucalyptus grandisEucgr.A01566.1
Fragaria vescamrna30104.1-v1.0-hybrid
Glycine maxGlyma10g07520.1
Gossypium raimondiiGorai.009G409200.3Gorai.009G409200.4Gorai.009G409200.2Gorai.009G409200.1
Linum usitatissimumLus10033622Lus10017663
Malus domesticaMDP0000133066
Manihot esculentacassava4.1_023442mcassava4.1_007754m
Medicago truncatulaMedtr1g061560.1
Mimulus guttatusmgv1a006467m
Oryza sativaLOC_Os01g63840.2LOC_Os01g63840.1
Panicum virgatumPavirv00040033mPavirv00069505m
Physcomitrella patensPp1s441_14V6.1
Phaseolus vulgarisPhvul.007G224100.1
Picea abiesMA_159008g0430
Populus trichocarpaPotri.016G095900.3Potri.016G095900.6Potri.016G095900.1Potri.016G095900.5Potri.016G095900.2
Potri.016G095900.4
Prunus persicappa025343m
Ricinus communis29815.m000507
Setaria italicaSi001596m
Selaginella moellendorffii76719
Sorghum bicolorSb03g040370.1
Thellungiella halophilaThhalv10013569m
Vitis viniferaGSVIVT01033751001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny